Very interesting idea,flyer.
I will say that there probably is some oxygen permeability in the bags. One of my best friends was in charge of a low volume parenterals unit for a medical supplies company (think IV bags), and he spent considerable time and effort sourcing plastic materials for their production line that had low permeability.
Obviously you would be limited by the volume of the bag, but I think the idea has some merit. You could just store in the original box for stacking and protection.
How are you thinking you'd use it for bottling? attach a filler hose to the bag somehow, or perhaps to the cap?